DOC: Deep revision of documentation building #3120
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The ``InterfaceHelpWriter`` class was practically a clone of ``ApiDocWriter``. Both have been merged into one single module, having the Interface helper inherit from the ApiDocWriter.
This PR follows up on nipy#3119 (merge that one first for a clean diff, or diff against ``oesteban:maint/dedup-apigen-code``). In practice, this PR fixes several broken points of our documentation (e.g., the workflows list was empty and now it has been updated, changelog not rendered, API of pure python code not rendered by the Nipype API parser was missing, etc.). CHANGES ------- * Replaced the ``numpydoc`` sphinx extension with ``sphinxcontrib-napoleon``. * Removed autosummary sphinx extension, required by numpydoc * Cleared up ``docs/sphinxext/*``, as nothing is now used from there * Use current sphinx-apidoc/autodoc/autosummary * Removed the modref generation tooling, as it is not necessary anymore after re-enabling apidoc. * Cut building warnings down to 321 - just those we incur because our API generator. This required some fixes of some docstrings. Beyond those corresponding to the Nipype API generator, only missing links remain as warnings (for sections in the navbar). * Updated changelogs to be reStructuredText.
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@@ Coverage Diff @@
## master #3120 +/- ##
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Coverage 64.16% 64.16%
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Files 293 293
Lines 39222 39222
Branches 5168 5168
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Hits 25166 25166
Misses 13018 13018
Partials 1038 1038
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This PR follows up on #3119 (merge that one first for a clean diff, or
diff against
oesteban:maint/dedup-apigen-code).In practice, this PR fixes several broken points of our documentation
(e.g., the workflows list was empty and now it has been updated,
changelog not rendered, API of pure python code not rendered by the
Nipype API parser was missing, etc.).
CHANGES
numpydocsphinx extension withsphinxcontrib-napoleon.docs/sphinxext/*, as nothing is now used from thereafter re-enabling apidoc.
API generator. This required some fixes of some docstrings.
Beyond those corresponding to the Nipype API generator, only missing
links remain as warnings (for sections in the navbar).