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FIX: replace the MRtrix3 command fs_parc_replace_sgm_first to labelsgmfix #2652

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4 changes: 2 additions & 2 deletions nipype/interfaces/mrtrix3/preprocess.py
Original file line number Diff line number Diff line change
Expand Up @@ -249,12 +249,12 @@ class ReplaceFSwithFIRST(CommandLine):
>>> prep.inputs.in_t1w = 'T1.nii.gz'
>>> prep.inputs.in_config = 'mrtrix3_labelconfig.txt'
>>> prep.cmdline # doctest: +ELLIPSIS
'fs_parc_replace_sgm_first aparc+aseg.nii T1.nii.gz \
'labelsgmfix aparc+aseg.nii T1.nii.gz \
mrtrix3_labelconfig.txt aparc+first.mif'
>>> prep.run() # doctest: +SKIP
"""

_cmd = 'fs_parc_replace_sgm_first'
_cmd = 'labelsgmfix'
input_spec = ReplaceFSwithFIRSTInputSpec
output_spec = ReplaceFSwithFIRSTOutputSpec

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