napari-matplotlib

A plugin to create Matplotlib plots from napari layers

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Introduction

napari-matplotlib is a bridge between napari and matplotlib, making it easy to create publication quality Matplotlib plots based on the data loaded in napari layers.

Available widgets

Slice

Plots 1D slices of data along a specified axis.

Histogram

Plots histograms of individual image layers, or RGB histograms of an RGB image

Scatter

Scatters the values of two similarly sized images layers against each other.

Installation

You can install napari-matplotlib via pip:

pip install napari-matplotlib

To install latest development version :

pip install git+https://github.com/matplotlib/napari-matplotlib.git

Contributing

Contributions are very welcome! Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, napari-matplotlib is free and open source software.

Issues

If you encounter any problems, please file an issue along with a detailed description.