From 31fd9b52f375fc2c2cd6697c6a09e89a64369514 Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Sun, 5 Jan 2025 16:40:21 -0800 Subject: [PATCH 01/13] feat: add the C src files --- .../stdlib/stats/base/dists/chisquare/mgf.h | 43 ++++++++++++ .../base/dists/chisquare/mgf/src/Makefile | 70 +++++++++++++++++++ .../base/dists/chisquare/mgf/src/addon.c | 23 ++++++ .../stats/base/dists/chisquare/mgf/src/main.c | 47 +++++++++++++ 4 files changed, 183 insertions(+) create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include/stdlib/stats/base/dists/chisquare/mgf.h create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/Makefile create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/addon.c create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include/stdlib/stats/base/dists/chisquare/mgf.h b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include/stdlib/stats/base/dists/chisquare/mgf.h new file mode 100644 index 000000000000..ec1ea5bef17a --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include/stdlib/stats/base/dists/chisquare/mgf.h @@ -0,0 +1,43 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#ifndef STDLIB_STATS_BASE_DISTS_CHISQUARE_MGF_H +#define STDLIB_STATS_BASE_DISTS_CHISQUARE_MGF_H + +/* +* If C++, prevent name mangling so that the compiler emits a binary file having undecorated names, thus mirroring the behavior of a C compiler. +*/ +#ifdef __cplusplus +extern "C" { +#endif + +/** +* Evaluates the moment-generating function (MGF) for a chi-squared distribution +* with degrees of freedom `k` at a value `t`. +* +* @param t input value +* @param k degrees of freedom (must be non-negative) +* @return evaluated MGF +*/ +double stdlib_base_dists_chisquare_mgf( const double t, const double k ); + +#ifdef __cplusplus +} +#endif + +#endif // !STDLIB_STATS_BASE_DISTS_CHISQUARE_MGF_H diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/Makefile b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/Makefile new file mode 100644 index 000000000000..7733b6180cb4 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/Makefile @@ -0,0 +1,70 @@ +#/ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +#/ + +# VARIABLES # + +ifndef VERBOSE + QUIET := @ +else + QUIET := +endif + +# Determine the OS ([1][1], [2][2]). +# +# [1]: https://en.wikipedia.org/wiki/Uname#Examples +# [2]: http://stackoverflow.com/a/27776822/2225624 +OS ?= $(shell uname) +ifneq (, $(findstring MINGW,$(OS))) + OS := WINNT +else +ifneq (, $(findstring MSYS,$(OS))) + OS := WINNT +else +ifneq (, $(findstring CYGWIN,$(OS))) + OS := WINNT +else +ifneq (, $(findstring Windows_NT,$(OS))) + OS := WINNT +endif +endif +endif +endif + + +# RULES # + +#/ +# Removes generated files for building an add-on. +# +# @example +# make clean-addon +#/ +clean-addon: + $(QUIET) -rm -f *.o *.node + +.PHONY: clean-addon + +#/ +# Removes generated files. +# +# @example +# make clean +#/ +clean: clean-addon + +.PHONY: clean diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/addon.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/addon.c new file mode 100644 index 000000000000..f49acabad3f7 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/addon.c @@ -0,0 +1,23 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/math/base/napi/binary.h" +#include "stdlib/stats/base/dists/chisquare/mgf.h" + +// cppcheck-suppress shadowFunction +STDLIB_MATH_BASE_NAPI_MODULE_DD_D( stdlib_base_dists_chisquare_mgf ) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c new file mode 100644 index 000000000000..0cf61cb8b58d --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c @@ -0,0 +1,47 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2018 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/math/base/assert/is_nan.h" +#include "stdlib/math/base/special/pow.h" + +/** +* Evaluates the moment-generating function (MGF) for a chi-squared distribution +* with degrees of freedom `k` at a value `t`. +* +* @param t input value +* @param k degrees of freedom (must be non-negative) +* @return evaluated MGF, or NaN if input is invalid +* +* @example +* double y = stdlib_base_dists_chisquare_mgf( 0.4, 2.0 ); +* // returns ~5.0 +* +* @example +* double y = stdlib_base_dists_chisquare_mgf( -1.0, 5.0 ); +* // returns ~0.0642 +* +* @example +* double y = stdlib_base_dists_chisquare_mgf( 0.0, 10.0 ); +* // returns 1.0 +*/ +double stdlib_base_dists_chisquare_mgf( const double t, const double k ) { + if ( stdlib_base_is_nan( t ) || stdlib_base_is_nan( k ) || k < 0.0 || t >= 0.5 ) { + return 0.0 / 0.0; // NaN + } + return stdlib_base_pow( 1.0 - (2.0 * t), -k / 2.0 ); +} From 24b94488a4b52cf27aa1e51ebd54fdf10f27d797 Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Sun, 5 Jan 2025 16:40:36 -0800 Subject: [PATCH 02/13] feat: add the C benchmark and example files --- .../dists/chisquare/mgf/benchmark/c/Makefile | 146 ++++++++++++++++++ .../chisquare/mgf/benchmark/c/benchmark.c | 107 +++++++++++++ .../dists/chisquare/mgf/examples/c/Makefile | 146 ++++++++++++++++++ .../dists/chisquare/mgf/examples/c/example.c | 44 ++++++ 4 files changed, 443 insertions(+) create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/Makefile create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/Makefile create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/Makefile b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/Makefile new file mode 100644 index 000000000000..a4bd7b38fd74 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/Makefile @@ -0,0 +1,146 @@ +#/ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +#/ + +# VARIABLES # + +ifndef VERBOSE + QUIET := @ +else + QUIET := +endif + +# Determine the OS ([1][1], [2][2]). +# +# [1]: https://en.wikipedia.org/wiki/Uname#Examples +# [2]: http://stackoverflow.com/a/27776822/2225624 +OS ?= $(shell uname) +ifneq (, $(findstring MINGW,$(OS))) + OS := WINNT +else +ifneq (, $(findstring MSYS,$(OS))) + OS := WINNT +else +ifneq (, $(findstring CYGWIN,$(OS))) + OS := WINNT +else +ifneq (, $(findstring Windows_NT,$(OS))) + OS := WINNT +endif +endif +endif +endif + +# Define the program used for compiling C source files: +ifdef C_COMPILER + CC := $(C_COMPILER) +else + CC := gcc +endif + +# Define the command-line options when compiling C files: +CFLAGS ?= \ + -std=c99 \ + -O3 \ + -Wall \ + -pedantic + +# Determine whether to generate position independent code ([1][1], [2][2]). +# +# [1]: https://gcc.gnu.org/onlinedocs/gcc/Code-Gen-Options.html#Code-Gen-Options +# [2]: http://stackoverflow.com/questions/5311515/gcc-fpic-option +ifeq ($(OS), WINNT) + fPIC ?= +else + fPIC ?= -fPIC +endif + +# List of includes (e.g., `-I /foo/bar -I /beep/boop/include`): +INCLUDE ?= + +# List of source files: +SOURCE_FILES ?= + +# List of libraries (e.g., `-lopenblas -lpthread`): +LIBRARIES ?= + +# List of library paths (e.g., `-L /foo/bar -L /beep/boop`): +LIBPATH ?= + +# List of C targets: +c_targets := benchmark.out + + +# RULES # + +#/ +# Compiles source files. +# +# @param {string} [C_COMPILER] - C compiler (e.g., `gcc`) +# @param {string} [CFLAGS] - C compiler options +# @param {(string|void)} [fPIC] - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} [INCLUDE] - list of includes (e.g., `-I /foo/bar -I /beep/boop/include`) +# @param {string} [SOURCE_FILES] - list of source files +# @param {string} [LIBPATH] - list of library paths (e.g., `-L /foo/bar -L /beep/boop`) +# @param {string} [LIBRARIES] - list of libraries (e.g., `-lopenblas -lpthread`) +# +# @example +# make +# +# @example +# make all +#/ +all: $(c_targets) + +.PHONY: all + +#/ +# Compiles C source files. +# +# @private +# @param {string} CC - C compiler (e.g., `gcc`) +# @param {string} CFLAGS - C compiler options +# @param {(string|void)} fPIC - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} INCLUDE - list of includes (e.g., `-I /foo/bar`) +# @param {string} SOURCE_FILES - list of source files +# @param {string} LIBPATH - list of library paths (e.g., `-L /foo/bar`) +# @param {string} LIBRARIES - list of libraries (e.g., `-lopenblas`) +#/ +$(c_targets): %.out: %.c + $(QUIET) $(CC) $(CFLAGS) $(fPIC) $(INCLUDE) -o $@ $(SOURCE_FILES) $< $(LIBPATH) -lm $(LIBRARIES) + +#/ +# Runs compiled benchmarks. +# +# @example +# make run +#/ +run: $(c_targets) + $(QUIET) ./$< + +.PHONY: run + +#/ +# Removes generated files. +# +# @example +# make clean +#/ +clean: + $(QUIET) -rm -f *.o *.out + +.PHONY: clean diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c new file mode 100644 index 000000000000..7b8537c2428f --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c @@ -0,0 +1,107 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/stats/base/dists/chisquare/mgf.h" +#include +#include +#include +#include +#include + +#define NAME "chisquare-mgf" +#define ITERATIONS 1000000 +#define REPEATS 3 + +static void print_version( void ) { + printf( "TAP version 13\n" ); +} + +static void print_summary( int total, int passing ) { + printf( "#\n" ); + printf( "1..%d\n", total ); // TAP plan + printf( "# total %d\n", total ); + printf( "# pass %d\n", passing ); + printf( "#\n" ); + printf( "# ok\n" ); +} + +static void print_results( double elapsed ) { + double rate = (double)ITERATIONS / elapsed; + printf( " ---\n" ); + printf( " iterations: %d\n", ITERATIONS ); + printf( " elapsed: %0.9f\n", elapsed ); + printf( " rate: %0.9f\n", rate ); + printf( " ...\n" ); +} + +static double tic( void ) { + struct timeval now; + gettimeofday( &now, NULL ); + return (double)now.tv_sec + (double)now.tv_usec/1.0e6; +} + +static double random_uniform( const double min, const double max ) { + double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return min + ( v * ( max - min ) ); +} + +static double benchmark( void ) { + double elapsed; + double t[ 100 ]; + double k[ 100 ]; + double y; + double start; + int i; + + for ( i = 0; i < 100; i++ ) { + t[ i ] = random_uniform( -0.4, 0.4 ); + k[ i ] = random_uniform( 0.1, 10.0 ); + } + + start = tic(); + for ( i = 0; i < ITERATIONS; i++ ) { + y = stdlib_base_dists_chisquare_mgf( t[ i % 100 ], k[ i % 100 ] ); + if ( isnan( y ) ) { + printf( "should not return NaN\n" ); + break; + } + } + elapsed = tic() - start; + + if ( isnan( y ) ) { + printf( "should not return NaN\n" ); + } + return elapsed; +} + +int main( void ) { + double elapsed; + int i; + + // Seed the random number generator: + srand( time( NULL ) ); + + print_version(); + for ( i = 0; i < REPEATS; i++ ) { + printf( "# c::%s\n", NAME ); + elapsed = benchmark(); + print_results( elapsed ); + printf( "ok %d benchmark finished\n", i+1 ); + } + print_summary( REPEATS, REPEATS ); +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/Makefile b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/Makefile new file mode 100644 index 000000000000..25ced822f96a --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/Makefile @@ -0,0 +1,146 @@ +#/ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +#/ + +# VARIABLES # + +ifndef VERBOSE + QUIET := @ +else + QUIET := +endif + +# Determine the OS ([1][1], [2][2]). +# +# [1]: https://en.wikipedia.org/wiki/Uname#Examples +# [2]: http://stackoverflow.com/a/27776822/2225624 +OS ?= $(shell uname) +ifneq (, $(findstring MINGW,$(OS))) + OS := WINNT +else +ifneq (, $(findstring MSYS,$(OS))) + OS := WINNT +else +ifneq (, $(findstring CYGWIN,$(OS))) + OS := WINNT +else +ifneq (, $(findstring Windows_NT,$(OS))) + OS := WINNT +endif +endif +endif +endif + +# Define the program used for compiling C source files: +ifdef C_COMPILER + CC := $(C_COMPILER) +else + CC := gcc +endif + +# Define the command-line options when compiling C files: +CFLAGS ?= \ + -std=c99 \ + -O3 \ + -Wall \ + -pedantic + +# Determine whether to generate position independent code ([1][1], [2][2]). +# +# [1]: https://gcc.gnu.org/onlinedocs/gcc/Code-Gen-Options.html#Code-Gen-Options +# [2]: http://stackoverflow.com/questions/5311515/gcc-fpic-option +ifeq ($(OS), WINNT) + fPIC ?= +else + fPIC ?= -fPIC +endif + +# List of includes (e.g., `-I /foo/bar -I /beep/boop/include`): +INCLUDE ?= + +# List of source files: +SOURCE_FILES ?= + +# List of libraries (e.g., `-lopenblas -lpthread`): +LIBRARIES ?= + +# List of library paths (e.g., `-L /foo/bar -L /beep/boop`): +LIBPATH ?= + +# List of C targets: +c_targets := example.out + + +# RULES # + +#/ +# Compiles source files. +# +# @param {string} [C_COMPILER] - C compiler (e.g., `gcc`) +# @param {string} [CFLAGS] - C compiler options +# @param {(string|void)} [fPIC] - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} [INCLUDE] - list of includes (e.g., `-I /foo/bar -I /beep/boop/include`) +# @param {string} [SOURCE_FILES] - list of source files +# @param {string} [LIBPATH] - list of library paths (e.g., `-L /foo/bar -L /beep/boop`) +# @param {string} [LIBRARIES] - list of libraries (e.g., `-lopenblas -lpthread`) +# +# @example +# make +# +# @example +# make all +#/ +all: $(c_targets) + +.PHONY: all + +#/ +# Compiles C source files. +# +# @private +# @param {string} CC - C compiler (e.g., `gcc`) +# @param {string} CFLAGS - C compiler options +# @param {(string|void)} fPIC - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} INCLUDE - list of includes (e.g., `-I /foo/bar`) +# @param {string} SOURCE_FILES - list of source files +# @param {string} LIBPATH - list of library paths (e.g., `-L /foo/bar`) +# @param {string} LIBRARIES - list of libraries (e.g., `-lopenblas`) +#/ +$(c_targets): %.out: %.c + $(QUIET) $(CC) $(CFLAGS) $(fPIC) $(INCLUDE) -o $@ $(SOURCE_FILES) $< $(LIBPATH) -lm $(LIBRARIES) + +#/ +# Runs compiled examples. +# +# @example +# make run +#/ +run: $(c_targets) + $(QUIET) ./$< + +.PHONY: run + +#/ +# Removes generated files. +# +# @example +# make clean +#/ +clean: + $(QUIET) -rm -f *.o *.out + +.PHONY: clean diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c new file mode 100644 index 000000000000..5c15bd2928bd --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c @@ -0,0 +1,44 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/stats/base/dists/chisquare/mgf.h" +#include +#include + +static double random_uniform( const double min, const double max ) { + double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return min + ( v * ( max - min ) ); +} + +int main( void ) { + double t; + double k; + double result; + int i; + + for ( i = 0; i < 10; i++ ) { + t = random_uniform( -0.5, 0.4 ); + k = random_uniform( 0.1, 10.0 ); + + result = stdlib_base_dists_chisquare_mgf( t, k ); + + printf( "t: %lf, k: %lf, MGF: %lf \n", t, k, result ); + } + + return 0; +} From 802c112baa4e7202ba8504ebdaa1175d469fdc01 Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Sun, 5 Jan 2025 16:40:49 -0800 Subject: [PATCH 03/13] feat: add the JS native files --- .../mgf/benchmark/benchmark.native.js | 70 +++++++++++ .../base/dists/chisquare/mgf/lib/native.js | 59 +++++++++ .../dists/chisquare/mgf/test/test.native.js | 114 ++++++++++++++++++ 3 files changed, 243 insertions(+) create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/benchmark.native.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/lib/native.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/benchmark.native.js b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/benchmark.native.js new file mode 100644 index 000000000000..d856d25b3835 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/benchmark.native.js @@ -0,0 +1,70 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var resolve = require( 'path' ).resolve; +var bench = require( '@stdlib/bench' ); +var Float64Array = require( '@stdlib/array/float64' ); +var randu = require( '@stdlib/random/base/randu' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var tryRequire = require( '@stdlib/utils/try-require' ); +var pkg = require( './../package.json' ).name; + + +// VARIABLES // + +var mgf = tryRequire( resolve( __dirname, './../lib/native.js' ) ); +var opts = { + 'skip': ( mgf instanceof Error ) +}; + + +// MAIN // + +bench( pkg+'::native', opts, function benchmark( b ) { + var len; + var t; + var k; + var y; + var i; + + len = 100; + t = new Float64Array( len ); + k = new Float64Array( len ); + for ( i = 0; i < len; i++ ) { + t[ i ] = ( randu() * 0.8 ) - 0.4; + k[ i ] = ( randu() * 10.0 ) + 0.1; + } + + b.tic(); + for ( i = 0; i < b.iterations; i++ ) { + y = mgf( t[ i % len ], k[ i % len ] ); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + } + b.toc(); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + b.pass( 'benchmark finished' ); + b.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/lib/native.js b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/lib/native.js new file mode 100644 index 000000000000..dfdb8cda5682 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/lib/native.js @@ -0,0 +1,59 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var addon = require( './../src/addon.node' ); + + +// MAIN // + +/** +* Evaluates the moment-generating function (MGF) for a chi-squared distribution with degrees of freedom `k` at a value `t`. +* +* @private +* @param {number} t - input value +* @param {PositiveNumber} k - degrees of freedom +* @returns {number} evaluated MGF +* +* @example +* var v = mgf( 0.4, 2.0 ); +* // returns ~5.0 +* +* @example +* var v = mgf( -1.0, 5.0 ); +* // returns ~0.0642 +* +* @example +* var v = mgf( 0.0, 10.0 ); +* // returns 1.0 +* +* @example +* var v = mgf( NaN, 5.0 ); +* // returns NaN +*/ +function mgf( t, k ) { + return addon( t, k ); +} + + +// EXPORTS // + +module.exports = mgf; diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js new file mode 100644 index 000000000000..922932c55c77 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js @@ -0,0 +1,114 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2018 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var resolve = require( 'path' ).resolve; +var tape = require( 'tape' ); +var tryRequire = require( '@stdlib/utils/try-require' ); +var abs = require( '@stdlib/math/base/special/abs' ); +var NINF = require( '@stdlib/constants/float64/ninf' ); +var EPS = require( '@stdlib/constants/float64/eps' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); + + +// VARIABLES // + +var mgf = tryRequire( resolve( __dirname, './../lib/native.js' ) ); +var opts = { + 'skip': ( mgf instanceof Error ) +}; + + +// FIXTURES // + +var decimalDecimal = require( './fixtures/julia/decimal_decimal.json' ); + + +// TESTS // + +tape( 'main export is a function', opts, function test( t ) { + t.ok( true, __filename ); + t.strictEqual( typeof mgf, 'function', 'main export is a function' ); + t.end(); +}); + +tape( 'if provided `NaN` for any parameter, the function returns `NaN`', opts, function test( t ) { + var y = mgf( NaN, 1.0 ); + t.equal( isnan( y ), true, 'returns NaN' ); + y = mgf( 0.0, NaN ); + t.equal( isnan( y ), true, 'returns NaN' ); + t.end(); +}); + +tape( 'if provided a negative `k`, the function always returns `NaN`', opts, function test( t ) { + var y; + + y = mgf( 0.4, -1.0 ); + t.equal( isnan( y ), true, 'returns NaN' ); + + y = mgf( 0.0, -1.0 ); + t.equal( isnan( y ), true, 'returns NaN' ); + + y = mgf( 0.4, NINF ); + t.equal( isnan( y ), true, 'returns NaN' ); + + t.end(); +}); + +tape( 'if provided `t >= 0.5`, the function always returns `NaN`', opts, function test( t ) { + var y; + + y = mgf( 0.5, 1.0 ); + t.equal( isnan( y ), true, 'returns NaN' ); + + y = mgf( 1.0, 1.0 ); + t.equal( isnan( y ), true, 'returns NaN' ); + + y = mgf( 10.0, 1.0 ); + t.equal( isnan( y ), true, 'returns NaN' ); + + t.end(); +}); + +tape( 'the function evaluates the MGF for `x` given degrees of freedom `k`', opts, function test( t ) { + var expected; + var delta; + var tol; + var x; + var k; + var y; + var i; + + expected = decimalDecimal.expected; + x = decimalDecimal.x; + k = decimalDecimal.k; + for ( i = 0; i < x.length; i++ ) { + y = mgf( x[i], k[i] ); + if ( y === expected[i] ) { + t.equal( y, expected[i], 'x: '+x[i]+', k: '+k[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. k: '+k[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); From 1a5005d601fcfa2a7378f3ca3bcd434cb5ed6be8 Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Sun, 5 Jan 2025 16:41:04 -0800 Subject: [PATCH 04/13] build: added the json and gyp dependency files --- .../base/dists/chisquare/mgf/binding.gyp | 149 ++++++++++++++++++ .../base/dists/chisquare/mgf/include.gypi | 48 ++++++ .../base/dists/chisquare/mgf/manifest.json | 79 ++++++++++ .../base/dists/chisquare/mgf/package.json | 3 + 4 files changed, 279 insertions(+) create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi create mode 100644 lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/manifest.json diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp new file mode 100644 index 000000000000..114dcb77c6aa --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp @@ -0,0 +1,149 @@ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +# A `.gyp` file for building a Node.js native add-on. +# +# [1]: https://gyp.gsrc.io/docs/InputFormatReference.md +# [2]: https://gyp.gsrc.io/docs/UserDocumentation.md +{ + # List of files to include in this file: + "includes": [ + "./include.gypi", + ], + # Define variables to be used throughout the configuration for all targets: + "variables": { + # Target name should match the add-on export name: + "addon_target_name%": "addon", + # Set variables based on the host OS: + "conditions": [ + [ + 'OS=="win"', + { + # Define the object file suffix: + "obj": "obj", + }, + { + # Define the object file suffix: + "obj": "o", + }, + ], # end condition (OS=="win") + ], # end conditions + }, # end variables + # Define compile targets: + "targets": [ + # Target to generate an add-on: + { + # The target name should match the add-on export name: + "target_name": "<(addon_target_name)", + # Define dependencies: + "dependencies": [], + # Define directories which contain relevant include headers: + "include_dirs": [ + # Local include directory: + "<@(include_dirs)", + ], + # List of source files: + "sources": [ + "<@(src_files)", + "src/addon.c", + ], + # Settings which should be applied when a target's object files are used as linker input: + "link_settings": { + # Define libraries: + "libraries": [ + "<@(libraries)", + ], + # Define library directories: + "library_dirs": [ + "<@(library_dirs)", + ], + }, + # C/C++ compiler flags: + "cflags": [ + # Enable commonly used warning options: + "-Wall", + # Aggressive optimization: + "-O3", + ], + # C specific compiler flags: + "cflags_c": [ + # Specify the C standard to which a program is expected to conform: + "-std=c99", + ], + # C++ specific compiler flags: + "cflags_cpp": [ + # Specify the C++ standard to which a program is expected to conform: + "-std=c++11", + ], + # Linker flags: + "ldflags": [], + # Apply conditions based on the host OS: + "conditions": [ + [ + 'OS=="mac"', + { + # Linker flags: + "ldflags": [ + "-undefined dynamic_lookup", + "-Wl,-no-pie", + "-Wl,-search_paths_first", + ], + }, + ], # end condition (OS=="mac") + [ + 'OS!="win"', + { + # C/C++ flags: + "cflags": [ + # Generate platform-independent code: + "-fPIC", + ], + }, + ], # end condition (OS!="win") + ], # end conditions + }, # end target <(addon_target_name) + # Target to copy a generated add-on to a standard location: + { + "target_name": "copy_addon", + # Declare that the output of this target is not linked: + "type": "none", + # Define dependencies: + "dependencies": [ + # Require that the add-on be generated before building this target: + "<(addon_target_name)", + ], + # Define a list of actions: + "actions": [ + { + "action_name": "copy_addon", + "message": "Copying addon...", + # Explicitly list the inputs in the command-line invocation below: + "inputs": [], + # Declare the expected outputs: + "outputs": [ + "<(addon_output_dir)/<(addon_target_name).node", + ], + # Define the command-line invocation: + "action": [ + "cp", + "<(PRODUCT_DIR)/<(addon_target_name).node", + "<(addon_output_dir)/<(addon_target_name).node", + ], + }, + ], # end actions + }, # end target copy_addon + ], # end targets +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi new file mode 100644 index 000000000000..235be47d6d3b --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi @@ -0,0 +1,48 @@ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +# A GYP include file for building a Node.js native add-on. +# +# Main documentation: +# +# [1]: https://gyp.gsrc.io/docs/InputFormatReference.md +# [2]: https://gyp.gsrc.io/docs/UserDocumentation.md +{ + # Define variables to be used throughout the configuration for all targets: + "variables": { + # Source directory: + "src_dir": "./src", + # Include directories: + "include_dirs": [ + " Date: Sun, 5 Jan 2025 16:41:15 -0800 Subject: [PATCH 05/13] docs: update README with C API documentation --- type: pre_push_report description: Results of running various checks prior to pushing changes. report: - task: run_javascript_examples status: na - task: run_c_examples status: na - task: run_cpp_examples status: na - task: run_javascript_readme_examples status: na - task: run_c_benchmarks status: na - task: run_cpp_benchmarks status: na - task: run_fortran_benchmarks status: na - task: run_javascript_benchmarks status: na - task: run_julia_benchmarks status: na - task: run_python_benchmarks status: na - task: run_r_benchmarks status: na - task: run_javascript_tests status: na --- --- .../stats/base/dists/chisquare/mgf/README.md | 100 ++++++++++++++++++ 1 file changed, 100 insertions(+) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md index 6973dee0e708..6aca496282b7 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md @@ -151,6 +151,106 @@ for ( i = 0; i < 10; i++ ) { + + +* * * + +
+ +## C APIs + + + +
+ +
+ + + + + +
+ +### Usage + +```c +#include "stdlib/stats/base/dists/chisquare/mgf.h" +``` + +#### stdlib_base_dists_chisquare_mgf( t, k ) + +Evaluates the moment-generating function (MGF) for a chi-squared distribution +* with degrees of freedom `k` at a value `t`. + +```c +double out = stdlib_base_dists_chisquare_mgf( 0.4, 2.0 ); +// returns ~5.0 +``` + +The function accepts the following arguments: + +- **t**: `[in] double` input value. +- **k**: `[in] double` degrees of freedom (must be non-negative). + +```c +double stdlib_base_dists_chisquare_mgf( const double t, const double k ); +``` + +
+ + + + + +
+ +
+ + + + + +
+ +### Examples + +```c +#include "stdlib/stats/base/dists/chisquare/mgf.h" +#include +#include + +static double random_uniform( const double min, const double max ) { + double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return min + ( v * ( max - min ) ); +} + +int main( void ) { + double t; + double k; + double result; + int i; + + for ( i = 0; i < 10; i++ ) { + t = random_uniform( -0.5, 0.4 ); + k = random_uniform( 0.1, 10.0 ); + + result = stdlib_base_dists_chisquare_mgf( t, k ); + + printf( "t: %lf, k: %lf, MGF: %lf \n", t, k, result ); + } + + return 0; +} +``` + +
+ + + +
+ + +
From 60f110c3128353d76e40076ee2854ca39d2b3031 Mon Sep 17 00:00:00 2001 From: stdlib-bot <82920195+stdlib-bot@users.noreply.github.com> Date: Tue, 7 Jan 2025 23:27:43 +0000 Subject: [PATCH 06/13] chore: update copyright years --- .../@stdlib/stats/base/dists/chisquare/mgf/src/main.c | 2 +- .../@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c index 0cf61cb8b58d..a93a5a989740 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c @@ -1,7 +1,7 @@ /** * @license Apache-2.0 * -* Copyright (c) 2018 The Stdlib Authors. +* Copyright (c) 2025 The Stdlib Authors. * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js index 922932c55c77..e03ca489bc4e 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/test/test.native.js @@ -1,7 +1,7 @@ /** * @license Apache-2.0 * -* Copyright (c) 2018 The Stdlib Authors. +* Copyright (c) 2025 The Stdlib Authors. * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. From a6f5fa04f98f189102939889845bd9cc7740f51a Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Tue, 7 Jan 2025 17:04:42 -0800 Subject: [PATCH 07/13] docs: update README with proper print info in examples --- type: pre_push_report description: Results of running various checks prior to pushing changes. report: - task: run_javascript_examples status: na - task: run_c_examples status: na - task: run_cpp_examples status: na - task: run_javascript_readme_examples status: na - task: run_c_benchmarks status: na - task: run_cpp_benchmarks status: na - task: run_fortran_benchmarks status: na - task: run_javascript_benchmarks status: na - task: run_julia_benchmarks status: na - task: run_python_benchmarks status: na - task: run_r_benchmarks status: na - task: run_javascript_tests status: na --- --- .../@stdlib/stats/base/dists/chisquare/mgf/README.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md index 6aca496282b7..7165f6787424 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md @@ -179,8 +179,7 @@ for ( i = 0; i < 10; i++ ) { #### stdlib_base_dists_chisquare_mgf( t, k ) -Evaluates the moment-generating function (MGF) for a chi-squared distribution -* with degrees of freedom `k` at a value `t`. +Evaluates the moment-generating function (MGF) for a chi-squared distribution with degrees of freedom `k` at a value `t`. ```c double out = stdlib_base_dists_chisquare_mgf( 0.4, 2.0 ); @@ -236,7 +235,7 @@ int main( void ) { result = stdlib_base_dists_chisquare_mgf( t, k ); - printf( "t: %lf, k: %lf, MGF: %lf \n", t, k, result ); + printf( "t: %lf, k: %lf, M_X(t;k): %lf \n", t, k, result ); } return 0; From c18c4f2b20ec69bef43493a11e3ff7a419cb77c8 Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Tue, 7 Jan 2025 17:49:53 -0800 Subject: [PATCH 08/13] refactor: formatting c files --- type: pre_commit_static_analysis_report description: Results of running static analysis checks when committing changes. report: - task: lint_filenames status: passed - task: lint_editorconfig status: passed - task: lint_markdown status: na - task: lint_package_json status: na - task: lint_repl_help status: na - task: lint_javascript_src status: na - task: lint_javascript_cli status: na - task: lint_javascript_examples status: na - task: lint_javascript_tests status: na - task: lint_javascript_benchmarks status: na - task: lint_python status: na - task: lint_r status: na - task: lint_c_src status: missing_dependencies - task: lint_c_examples status: na - task: lint_c_benchmarks status: na - task: lint_c_tests_fixtures status: na - task: lint_shell status: na - task: lint_typescript_declarations status: na - task: lint_typescript_tests status: na - task: lint_license_headers status: passed --- --- .../chisquare/mgf/benchmark/c/benchmark.c | 12 ++++---- .../dists/chisquare/mgf/examples/c/example.c | 28 +++++++++---------- .../stats/base/dists/chisquare/mgf/src/main.c | 16 +++-------- 3 files changed, 24 insertions(+), 32 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c index 7b8537c2428f..0c01dcfe317f 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c @@ -16,12 +16,12 @@ * limitations under the License. */ +#include #include "stdlib/stats/base/dists/chisquare/mgf.h" -#include -#include #include +#include +#include #include -#include #define NAME "chisquare-mgf" #define ITERATIONS 1000000 @@ -52,7 +52,7 @@ static void print_results( double elapsed ) { static double tic( void ) { struct timeval now; gettimeofday( &now, NULL ); - return (double)now.tv_sec + (double)now.tv_usec/1.0e6; + return (double)now.tv_sec + (double)now.tv_usec / 1.0e6; } static double random_uniform( const double min, const double max ) { @@ -93,7 +93,7 @@ int main( void ) { double elapsed; int i; - // Seed the random number generator: + // Seed the random number generator: srand( time( NULL ) ); print_version(); @@ -101,7 +101,7 @@ int main( void ) { printf( "# c::%s\n", NAME ); elapsed = benchmark(); print_results( elapsed ); - printf( "ok %d benchmark finished\n", i+1 ); + printf( "ok %d benchmark finished\n", i + 1 ); } print_summary( REPEATS, REPEATS ); } diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c index 5c15bd2928bd..f0d5109708f9 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c @@ -17,28 +17,28 @@ */ #include "stdlib/stats/base/dists/chisquare/mgf.h" -#include #include +#include static double random_uniform( const double min, const double max ) { - double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); - return min + ( v * ( max - min ) ); + double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return min + ( v * ( max - min ) ); } int main( void ) { - double t; - double k; - double result; - int i; + double result; + double t; + double k; + int i; - for ( i = 0; i < 10; i++ ) { - t = random_uniform( -0.5, 0.4 ); - k = random_uniform( 0.1, 10.0 ); + for ( i = 0; i < 10; i++ ) { + t = random_uniform( -0.5, 0.4 ); + k = random_uniform( 0.1, 10.0 ); - result = stdlib_base_dists_chisquare_mgf( t, k ); + result = stdlib_base_dists_chisquare_mgf( t, k ); - printf( "t: %lf, k: %lf, MGF: %lf \n", t, k, result ); - } + printf( "t: %lf, k: %lf, M_X(t;k): %lf \n", t, k, result ); + } - return 0; + return 0; } diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c index a93a5a989740..0c8b40d8d6ee 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c @@ -28,20 +28,12 @@ * @return evaluated MGF, or NaN if input is invalid * * @example -* double y = stdlib_base_dists_chisquare_mgf( 0.4, 2.0 ); -* // returns ~5.0 -* -* @example -* double y = stdlib_base_dists_chisquare_mgf( -1.0, 5.0 ); -* // returns ~0.0642 -* -* @example * double y = stdlib_base_dists_chisquare_mgf( 0.0, 10.0 ); * // returns 1.0 */ double stdlib_base_dists_chisquare_mgf( const double t, const double k ) { - if ( stdlib_base_is_nan( t ) || stdlib_base_is_nan( k ) || k < 0.0 || t >= 0.5 ) { - return 0.0 / 0.0; // NaN - } - return stdlib_base_pow( 1.0 - (2.0 * t), -k / 2.0 ); + if ( stdlib_base_is_nan( t ) || stdlib_base_is_nan( k ) || k < 0.0 || t >= 0.5 ) { + return 0.0 / 0.0; // NaN + } + return stdlib_base_pow( 1.0 - ( 2.0 * t ), -k / 2.0 ); } From 73752c62b6b11049c26a88b5d6abf9d995c179da Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Tue, 7 Jan 2025 18:13:15 -0800 Subject: [PATCH 09/13] refactor: formatting dependency files --- type: pre_commit_static_analysis_report description: Results of running static analysis checks when committing changes. report: - task: lint_filenames status: passed - task: lint_editorconfig status: passed - task: lint_markdown status: na - task: lint_package_json status: passed - task: lint_repl_help status: na - task: lint_javascript_src status: na - task: lint_javascript_cli status: na - task: lint_javascript_examples status: na - task: lint_javascript_tests status: na - task: lint_javascript_benchmarks status: na - task: lint_python status: na - task: lint_r status: na - task: lint_c_src status: na - task: lint_c_examples status: na - task: lint_c_benchmarks status: na - task: lint_c_tests_fixtures status: na - task: lint_shell status: na - task: lint_typescript_declarations status: na - task: lint_typescript_tests status: na - task: lint_license_headers status: passed --- --- type: pre_push_report description: Results of running various checks prior to pushing changes. report: - task: run_javascript_examples status: na - task: run_c_examples status: passed - task: run_cpp_examples status: na - task: run_javascript_readme_examples status: na - task: run_c_benchmarks status: passed - task: run_cpp_benchmarks status: na - task: run_fortran_benchmarks status: na - task: run_javascript_benchmarks status: na - task: run_julia_benchmarks status: na - task: run_python_benchmarks status: na - task: run_r_benchmarks status: na - task: run_javascript_tests status: na --- --- .../base/dists/chisquare/mgf/binding.gyp | 269 ++++++++++-------- .../base/dists/chisquare/mgf/include.gypi | 55 ++-- .../base/dists/chisquare/mgf/package.json | 2 +- 3 files changed, 176 insertions(+), 150 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp index 114dcb77c6aa..ec3992233442 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp @@ -1,6 +1,6 @@ # @license Apache-2.0 # -# Copyright (c) 2025 The Stdlib Authors. +# Copyright (c) 2024 The Stdlib Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. @@ -19,131 +19,152 @@ # [1]: https://gyp.gsrc.io/docs/InputFormatReference.md # [2]: https://gyp.gsrc.io/docs/UserDocumentation.md { - # List of files to include in this file: - "includes": [ - "./include.gypi", - ], - # Define variables to be used throughout the configuration for all targets: - "variables": { - # Target name should match the add-on export name: - "addon_target_name%": "addon", - # Set variables based on the host OS: - "conditions": [ - [ - 'OS=="win"', - { - # Define the object file suffix: - "obj": "obj", - }, - { - # Define the object file suffix: - "obj": "o", - }, - ], # end condition (OS=="win") - ], # end conditions - }, # end variables - # Define compile targets: - "targets": [ - # Target to generate an add-on: + # List of files to include in this file: + 'includes': [ + './include.gypi', + ], + + # Define variables to be used throughout the configuration for all targets: + 'variables': { + # Target name should match the add-on export name: + 'addon_target_name%': 'addon', + + # Set variables based on the host OS: + 'conditions': [ + [ + 'OS=="win"', { - # The target name should match the add-on export name: - "target_name": "<(addon_target_name)", - # Define dependencies: - "dependencies": [], - # Define directories which contain relevant include headers: - "include_dirs": [ - # Local include directory: - "<@(include_dirs)", - ], - # List of source files: - "sources": [ - "<@(src_files)", - "src/addon.c", - ], - # Settings which should be applied when a target's object files are used as linker input: - "link_settings": { - # Define libraries: - "libraries": [ - "<@(libraries)", - ], - # Define library directories: - "library_dirs": [ - "<@(library_dirs)", - ], - }, - # C/C++ compiler flags: - "cflags": [ - # Enable commonly used warning options: - "-Wall", - # Aggressive optimization: - "-O3", - ], - # C specific compiler flags: - "cflags_c": [ - # Specify the C standard to which a program is expected to conform: - "-std=c99", + # Define the object file suffix: + 'obj': 'obj', + }, + { + # Define the object file suffix: + 'obj': 'o', + } + ], # end condition (OS=="win") + ], # end conditions + }, # end variables + + # Define compile targets: + 'targets': [ + + # Target to generate an add-on: + { + # The target name should match the add-on export name: + 'target_name': '<(addon_target_name)', + + # Define dependencies: + 'dependencies': [], + + # Define directories which contain relevant include headers: + 'include_dirs': [ + # Local include directory: + '<@(include_dirs)', + ], + + # List of source files: + 'sources': [ + '<@(src_files)', + ], + + # Settings which should be applied when a target's object files are used as linker input: + 'link_settings': { + # Define libraries: + 'libraries': [ + '<@(libraries)', + ], + + # Define library directories: + 'library_dirs': [ + '<@(library_dirs)', + ], + }, + + # C/C++ compiler flags: + 'cflags': [ + # Enable commonly used warning options: + '-Wall', + + # Aggressive optimization: + '-O3', + ], + + # C specific compiler flags: + 'cflags_c': [ + # Specify the C standard to which a program is expected to conform: + '-std=c99', + ], + + # C++ specific compiler flags: + 'cflags_cpp': [ + # Specify the C++ standard to which a program is expected to conform: + '-std=c++11', + ], + + # Linker flags: + 'ldflags': [], + + # Apply conditions based on the host OS: + 'conditions': [ + [ + 'OS=="mac"', + { + # Linker flags: + 'ldflags': [ + '-undefined dynamic_lookup', + '-Wl,-no-pie', + '-Wl,-search_paths_first', ], - # C++ specific compiler flags: - "cflags_cpp": [ - # Specify the C++ standard to which a program is expected to conform: - "-std=c++11", + }, + ], # end condition (OS=="mac") + [ + 'OS!="win"', + { + # C/C++ flags: + 'cflags': [ + # Generate platform-independent code: + '-fPIC', ], - # Linker flags: - "ldflags": [], - # Apply conditions based on the host OS: - "conditions": [ - [ - 'OS=="mac"', - { - # Linker flags: - "ldflags": [ - "-undefined dynamic_lookup", - "-Wl,-no-pie", - "-Wl,-search_paths_first", - ], - }, - ], # end condition (OS=="mac") - [ - 'OS!="win"', - { - # C/C++ flags: - "cflags": [ - # Generate platform-independent code: - "-fPIC", - ], - }, - ], # end condition (OS!="win") - ], # end conditions - }, # end target <(addon_target_name) - # Target to copy a generated add-on to a standard location: + }, + ], # end condition (OS!="win") + ], # end conditions + }, # end target <(addon_target_name) + + # Target to copy a generated add-on to a standard location: + { + 'target_name': 'copy_addon', + + # Declare that the output of this target is not linked: + 'type': 'none', + + # Define dependencies: + 'dependencies': [ + # Require that the add-on be generated before building this target: + '<(addon_target_name)', + ], + + # Define a list of actions: + 'actions': [ { - "target_name": "copy_addon", - # Declare that the output of this target is not linked: - "type": "none", - # Define dependencies: - "dependencies": [ - # Require that the add-on be generated before building this target: - "<(addon_target_name)", - ], - # Define a list of actions: - "actions": [ - { - "action_name": "copy_addon", - "message": "Copying addon...", - # Explicitly list the inputs in the command-line invocation below: - "inputs": [], - # Declare the expected outputs: - "outputs": [ - "<(addon_output_dir)/<(addon_target_name).node", - ], - # Define the command-line invocation: - "action": [ - "cp", - "<(PRODUCT_DIR)/<(addon_target_name).node", - "<(addon_output_dir)/<(addon_target_name).node", - ], - }, - ], # end actions - }, # end target copy_addon - ], # end targets + 'action_name': 'copy_addon', + 'message': 'Copying addon...', + + # Explicitly list the inputs in the command-line invocation below: + 'inputs': [], + + # Declare the expected outputs: + 'outputs': [ + '<(addon_output_dir)/<(addon_target_name).node', + ], + + # Define the command-line invocation: + 'action': [ + 'cp', + '<(PRODUCT_DIR)/<(addon_target_name).node', + '<(addon_output_dir)/<(addon_target_name).node', + ], + }, + ], # end actions + }, # end target copy_addon + ], # end targets } diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi index 235be47d6d3b..575cb043c0bf 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi @@ -1,6 +1,6 @@ # @license Apache-2.0 # -# Copyright (c) 2025 The Stdlib Authors. +# Copyright (c) 2024 The Stdlib Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. @@ -21,28 +21,33 @@ # [1]: https://gyp.gsrc.io/docs/InputFormatReference.md # [2]: https://gyp.gsrc.io/docs/UserDocumentation.md { - # Define variables to be used throughout the configuration for all targets: - "variables": { - # Source directory: - "src_dir": "./src", - # Include directories: - "include_dirs": [ - " Date: Wed, 8 Jan 2025 02:29:36 +0000 Subject: [PATCH 10/13] chore: update copyright years --- .../@stdlib/stats/base/dists/chisquare/mgf/binding.gyp | 2 +- .../@stdlib/stats/base/dists/chisquare/mgf/include.gypi | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp index ec3992233442..68a1ca11d160 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/binding.gyp @@ -1,6 +1,6 @@ # @license Apache-2.0 # -# Copyright (c) 2024 The Stdlib Authors. +# Copyright (c) 2025 The Stdlib Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi index 575cb043c0bf..ecfaf82a3279 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/include.gypi @@ -1,6 +1,6 @@ # @license Apache-2.0 # -# Copyright (c) 2024 The Stdlib Authors. +# Copyright (c) 2025 The Stdlib Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. From 5267f591627c9e1bb94fb251b67bcbcaa8f99201 Mon Sep 17 00:00:00 2001 From: Karan Anand Date: Tue, 7 Jan 2025 18:32:05 -0800 Subject: [PATCH 11/13] refactor: formatting benchmark.c --- type: pre_commit_static_analysis_report description: Results of running static analysis checks when committing changes. report: - task: lint_filenames status: passed - task: lint_editorconfig status: passed - task: lint_markdown status: na - task: lint_package_json status: na - task: lint_repl_help status: na - task: lint_javascript_src status: na - task: lint_javascript_cli status: na - task: lint_javascript_examples status: na - task: lint_javascript_tests status: na - task: lint_javascript_benchmarks status: na - task: lint_python status: na - task: lint_r status: na - task: lint_c_src status: na - task: lint_c_examples status: na - task: lint_c_benchmarks status: missing_dependencies - task: lint_c_tests_fixtures status: na - task: lint_shell status: na - task: lint_typescript_declarations status: na - task: lint_typescript_tests status: na - task: lint_license_headers status: passed --- --- type: pre_push_report description: Results of running various checks prior to pushing changes. report: - task: run_javascript_examples status: na - task: run_c_examples status: na - task: run_cpp_examples status: na - task: run_javascript_readme_examples status: na - task: run_c_benchmarks status: passed - task: run_cpp_benchmarks status: na - task: run_fortran_benchmarks status: na - task: run_javascript_benchmarks status: na - task: run_julia_benchmarks status: na - task: run_python_benchmarks status: na - task: run_r_benchmarks status: na - task: run_javascript_tests status: na --- --- .../stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c index 0c01dcfe317f..3b8e28aecbd4 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/benchmark/c/benchmark.c @@ -93,7 +93,7 @@ int main( void ) { double elapsed; int i; - // Seed the random number generator: + // Use the current time to seed the random number generator: srand( time( NULL ) ); print_version(); From 4f07e8eee7ccdd83f3633649208bc1dc9bee8268 Mon Sep 17 00:00:00 2001 From: Philipp Burckhardt Date: Wed, 8 Jan 2025 07:46:37 -0500 Subject: [PATCH 12/13] docs: reorder declarations in example code Signed-off-by: Philipp Burckhardt --- .../@stdlib/stats/base/dists/chisquare/mgf/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md index 7165f6787424..8689dc55cef8 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md @@ -224,9 +224,9 @@ static double random_uniform( const double min, const double max ) { } int main( void ) { + double result; double t; double k; - double result; int i; for ( i = 0; i < 10; i++ ) { From 99670a0bdde0505bf41542ac988606eeb73bb06c Mon Sep 17 00:00:00 2001 From: Philipp Burckhardt Date: Wed, 8 Jan 2025 07:50:11 -0500 Subject: [PATCH 13/13] chore: apply suggestions from code review Signed-off-by: Philipp Burckhardt --- .../@stdlib/stats/base/dists/chisquare/mgf/README.md | 4 ---- .../stats/base/dists/chisquare/mgf/examples/c/example.c | 4 ---- .../@stdlib/stats/base/dists/chisquare/mgf/src/main.c | 3 +-- 3 files changed, 1 insertion(+), 10 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md index 8689dc55cef8..a72ed97522cc 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/README.md @@ -232,13 +232,9 @@ int main( void ) { for ( i = 0; i < 10; i++ ) { t = random_uniform( -0.5, 0.4 ); k = random_uniform( 0.1, 10.0 ); - result = stdlib_base_dists_chisquare_mgf( t, k ); - printf( "t: %lf, k: %lf, M_X(t;k): %lf \n", t, k, result ); } - - return 0; } ``` diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c index f0d5109708f9..bb655596c94c 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/examples/c/example.c @@ -34,11 +34,7 @@ int main( void ) { for ( i = 0; i < 10; i++ ) { t = random_uniform( -0.5, 0.4 ); k = random_uniform( 0.1, 10.0 ); - result = stdlib_base_dists_chisquare_mgf( t, k ); - printf( "t: %lf, k: %lf, M_X(t;k): %lf \n", t, k, result ); } - - return 0; } diff --git a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c index 0c8b40d8d6ee..f085547ee3a2 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c +++ b/lib/node_modules/@stdlib/stats/base/dists/chisquare/mgf/src/main.c @@ -20,8 +20,7 @@ #include "stdlib/math/base/special/pow.h" /** -* Evaluates the moment-generating function (MGF) for a chi-squared distribution -* with degrees of freedom `k` at a value `t`. +* Evaluates the moment-generating function (MGF) for a chi-squared distribution with degrees of freedom `k` at a value `t`. * * @param t input value * @param k degrees of freedom (must be non-negative)