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BUG: pd.read_parquet drops indexes when mode.dtype_backend='pyarrow' #51717

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Closed
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rachtsingh opened this issue Mar 1, 2023 · 2 comments
Closed
3 tasks done
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Arrow pyarrow functionality Bug Closing Candidate May be closeable, needs more eyeballs IO Parquet parquet, feather
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@rachtsingh
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Pandas version checks

  • I have checked that this issue has not already been reported.

  • I have confirmed this bug exists on the latest version of pandas.

  • I have confirmed this bug exists on the main branch of pandas.

Reproducible Example

In [1]: pdf = pd.DataFrame({"idx": [0, 1, 2], "A": [1, 2, 3]}).set_index('idx')
[PYFLYBY] import pandas as pd

In [2]: pdf
Out[2]:
     A
idx
0    1
1    2
2    3

In [3]: pdf.to_parquet("~/tmp/test.parquet")

In [4]: with pd.option_context("mode.dtype_backend", "pyarrow"):
   ...:     df = pd.read_parquet("~/tmp/test.parquet")
   ...:

In [5]: df
Out[5]:
   A  idx
0  1    0
1  2    1
2  3    2

In [6]: pd.__version__
Out[6]: '2.1.0.dev0+93.g6bb8f73e75'

Issue Description

Roundtripping a DataFrame with an index to parquet and back under the options mode mode.type_backend='pyarrow' causes indexes to be dropped.

Expected Behavior

I think pd.read_parquet should read from the schema (in particular pandas_metadata['index_columns'] to set the index. I don't think this is a bug in a lower level library like pyarrow since I think (?) indexes are a Pandas-specific abstraction. I assume there's some reason that setting the option mode skips pandas_compat._reconstruct_index, but I can't figure it out.

This is what I expect to see instead:

In [16]: df = df.set_index('idx')

In [17]: df.info()
<class 'pandas.core.frame.DataFrame'>
Index: 3 entries, 0 to 2
Data columns (total 1 columns):
 #   Column  Non-Null Count  Dtype
---  ------  --------------  -----
 0   A       3 non-null      int64[pyarrow]
dtypes: int64[pyarrow](1)
memory usage: 50.0 bytes

In [18]: df.index
Out[18]: Index([0, 1, 2], dtype='int64[pyarrow]', name='idx')

Thanks for the help!

Installed Versions

INSTALLED VERSIONS

commit : 6bb8f73
python : 3.10.4.final.0
python-bits : 64
OS : Linux
OS-release : 5.15.90.1-microsoft-standard-WSL2
Version : #1 SMP Fri Jan 27 02:56:13 UTC 2023
machine : x86_64
processor : x86_64
byteorder : little
LC_ALL : None
LANG : C.UTF-8
LOCALE : en_US.UTF-8

pandas : 2.1.0.dev0+93.g6bb8f73e75
numpy : 1.23.3
pytz : 2022.2.1
dateutil : 2.8.2
setuptools : 58.1.0
pip : 22.3
Cython : 0.29.32
pytest : 7.1.3
hypothesis : None
sphinx : None
blosc : None
feather : None
xlsxwriter : None
lxml.etree : 4.9.1
html5lib : None
pymysql : None
psycopg2 : None
jinja2 : 3.1.2
IPython : 8.5.0
pandas_datareader: 0.10.0
bs4 : 4.11.1
bottleneck : 1.3.6
brotli : None
fastparquet : 0.8.3
fsspec : 2022.8.2
gcsfs : None
matplotlib : 3.5.3
numba : 0.56.4
numexpr : 2.8.4
odfpy : None
openpyxl : 3.0.10
pandas_gbq : None
pyarrow : 9.0.0
pyreadstat : None
pyxlsb : None
s3fs : 2022.8.2
scipy : 1.9.1
snappy : None
sqlalchemy : 1.4.41
tables : 3.8.0
tabulate : None
xarray : 2023.2.0
xlrd : 2.0.1
zstandard : 0.18.0
tzdata : None
qtpy : 2.3.0
pyqt5 : None

@rachtsingh rachtsingh added Bug Needs Triage Issue that has not been reviewed by a pandas team member labels Mar 1, 2023
@phofl phofl added IO Parquet parquet, feather Arrow pyarrow functionality and removed Needs Triage Issue that has not been reviewed by a pandas team member labels Mar 1, 2023
@phofl phofl added this to the 2.0 milestone Mar 1, 2023
@phofl
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phofl commented Mar 14, 2023

Hi, this will be fixed with pyarrow 12.0, so I don't think we should do anything here.

@phofl phofl added the Closing Candidate May be closeable, needs more eyeballs label Mar 14, 2023
@mroeschke
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Agreed, closing as an upstream issue

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3 participants