From 6a7c97aae42704513fb3d7c0c30daa3aa1d0f258 Mon Sep 17 00:00:00 2001 From: SheridanQ Date: Wed, 25 Jul 2018 12:08:49 -0500 Subject: [PATCH] FIX: replace the MRtrix3 command fs_parc_replace_sgm_first to labelsgmfix --- nipype/interfaces/mrtrix3/preprocess.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nipype/interfaces/mrtrix3/preprocess.py b/nipype/interfaces/mrtrix3/preprocess.py index fc3559c918..f506652849 100644 --- a/nipype/interfaces/mrtrix3/preprocess.py +++ b/nipype/interfaces/mrtrix3/preprocess.py @@ -249,12 +249,12 @@ class ReplaceFSwithFIRST(CommandLine): >>> prep.inputs.in_t1w = 'T1.nii.gz' >>> prep.inputs.in_config = 'mrtrix3_labelconfig.txt' >>> prep.cmdline # doctest: +ELLIPSIS - 'fs_parc_replace_sgm_first aparc+aseg.nii T1.nii.gz \ + 'labelsgmfix aparc+aseg.nii T1.nii.gz \ mrtrix3_labelconfig.txt aparc+first.mif' >>> prep.run() # doctest: +SKIP """ - _cmd = 'fs_parc_replace_sgm_first' + _cmd = 'labelsgmfix' input_spec = ReplaceFSwithFIRSTInputSpec output_spec = ReplaceFSwithFIRSTOutputSpec